41 changed files with 2850 additions and 124 deletions
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+1 -0.gitignore
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+4 -0.gitmodules
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+19 -0Pipfile
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+603 -0Pipfile.lock
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+38 -5SConstruct
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+36 -0collect_variable_degrees.py
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+35 -0contrib/qubosolver/SConscript
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+1 -0contrib/qubosolver/qbscxx
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+92 -0create_WMIS_QUBOS.py
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+1 -61generateRandomKsatDataSet_db.py
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+23 -0queryInstancesFromScope.js
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+77 -0query_req_data_for_solving.js
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+23 -4src/SConscript
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+2 -3src/runMinisat.cpp
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+161 -0src/runQbsolv.cpp
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+2 -4src/util/bson2ksatClauseConverter.h
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+7 -6src/util/bson2ksatConverter.h
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+85 -0src/util/bson2quboMtrx.h
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+43 -0src/util/bson_2_qubo_coupler.h
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+47 -0src/util/bson_2_wmis_qubo.h
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+2 -0src/util/conversions.h
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+3 -3src/util/convert.h
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+2 -2src/util/ksatClause2ministaClause.h
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+2 -4src/util/ksatModel2bson.h
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+10 -6src/util/minisatResult2bson.h
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+2 -4src/util/minisatStats2bson.h
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+1 -1src/util/minisatsolver.cpp
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+1 -1src/util/mongodbexperimentscope.cpp
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+79 -0src/util/wmis_qubo.cpp
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+52 -0src/util/wmis_qubo.h
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+47 -11testRandomSat.py
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+395 -5testSAT2QUBO.py
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+50 -0test_alpha_generation.py
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+252 -0test_sat_to_qubo_workflow.py
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+71 -1util/SAT2QUBO.py
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+18 -0util/graph.py
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+10 -2util/kSAT.py
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+264 -0util/queries.py
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+26 -1util/randomSAT.py
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+81 -0util/random_instance_pool.py
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+182 -0util/script.py
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.gitignore
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.gitmodules
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| @ -0,0 +1,19 @@ | |||
| [[source]] | |||
| name = "pypi" | |||
| url = "https://pypi.org/simple" | |||
| verify_ssl = true | |||
| [dev-packages] | |||
| [packages] | |||
| dwave-system = "*" | |||
| tqdm = "*" | |||
| matplotlib = "*" | |||
| seaborn = "*" | |||
| dwave-qbsolv = "*" | |||
| mysql-connector = "*" | |||
| pymongo = "*" | |||
| dwave-ocean-sdk = "*" | |||
| [requires] | |||
| python_version = "3.6" | |||
+ 603
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| @ -0,0 +1,603 @@ | |||
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| "python_version": "3.6" | |||
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| { | |||
| "name": "pypi", | |||
| "url": "https://pypi.org/simple", | |||
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| "sha256:255d10c2c9059964f6ebb5c900a830fc8a089731dda94a5cc873f673193d208b", | |||
| "sha256:358cc59e4e02a15d3725f204f2eb5777fc10595e2d9a9c4c8d82292f49af6d41", | |||
| "sha256:41f1b737d5f97f1e2af23d16fac6c0b8572f9c7ea73054f1258ca57f4f97cb80", | |||
| "sha256:6a5129576a2cf925cd100e06ead5f9ae4c86db70a854fb91cedb8d680112734a", | |||
| "sha256:80722b0d56dcb7ca8f75f99d8dadd7c7efd0d2265714d68f871ed437c32d82b3", | |||
| "sha256:88a960e949ec356f7016d84f8262dcff2b842fca5355b4c1be759f5c103b19b3", | |||
| "sha256:97872686223f47d95e914881cb0ca46e1bc622562600043da9edddcb54f2fe1e", | |||
| "sha256:a1df9d22433ab44b7c7e0bd33817134832ae8a8f3d93d9b9719fc032c5b20e96", | |||
| "sha256:ad385fbb9754023d17be14dd5aa67efff07f43c5df7f93118aef3c20e635ea19", | |||
| "sha256:b2d5ee7ba5c03b735c02e6ae75fd4ff8c831133e7ca078f2963408dc7beac428", | |||
| "sha256:c8c07cd8635d45b28ec53ee695e5ac8b0f9d9a4ae488a8d8ee168fe8fc75ba43", | |||
| "sha256:d44ebc9838b183e8237e7507885d52e8d08c48fdc953fd4a7ee3e56cb9d20977", | |||
| "sha256:dff97b0ee9256f0afdfc9eaa430736cdcdc18899d9a666658f161afd137cf93d", | |||
| "sha256:e47d248d614c68e4b029442de212bdd4f6ae02ae36821de319ae90314ea2578c", | |||
| "sha256:e650b521b429fed3d525428b1401a40051097a5a92c30076c91f36b31717e087" | |||
| ], | |||
| "version": "==3.7.0" | |||
| }, | |||
| "pymongo": { | |||
| "hashes": [ | |||
| "sha256:025f94fc1e1364f00e50badc88c47f98af20012f23317234e51a11333ef986e6", | |||
| "sha256:02aa7fb282606331aefbc0586e2cf540e9dbe5e343493295e7f390936ad2738e", | |||
| "sha256:057210e831573e932702cf332012ed39da78edf0f02d24a3f0b213264a87a397", | |||
| "sha256:0d946b79c56187fe139276d4c8ed612a27a616966c8b9779d6b79e2053587c8b", | |||
| "sha256:104790893b928d310aae8a955e0bdbaa442fb0ac0a33d1bbb0741c791a407778", | |||
| "sha256:15527ef218d95a8717486106553b0d54ff2641e795b65668754e17ab9ca6e381", | |||
| "sha256:1826527a0b032f6e20e7ac7f72d7c26dd476a5e5aa82c04aa1c7088a59fded7d", | |||
| "sha256:22e3aa4ce1c3eebc7f70f9ca7fd4ce1ea33e8bdb7b61996806cd312f08f84a3a", | |||
| "sha256:244e1101e9a48615b9a16cbd194f73c115fdfefc96894803158608115f703b26", | |||
| "sha256:24b8c04fdb633a84829d03909752c385faef249c06114cc8d8e1700b95aae5c8", | |||
| "sha256:2c276696350785d3104412cbe3ac70ab1e3a10c408e7b20599ee41403a3ed630", | |||
| "sha256:2d8474dc833b1182b651b184ace997a7bd83de0f51244de988d3c30e49f07de3", | |||
| "sha256:3119b57fe1d964781e91a53e81532c85ed1701baaddec592e22f6b77a9fdf3df", | |||
| "sha256:3bee8e7e0709b0fcdaa498a3e513bde9ffc7cd09dbceb11e425bd91c89dbd5b6", | |||
| "sha256:436c071e01a464753d30dbfc8768dd93aecf2a8e378e5314d130b95e77b4d612", | |||
| "sha256:46635e3f19ad04d5a7d7cf23d232388ddbfccf46d9a3b7436b6abadda4e84813", | |||
| "sha256:4772e0b679717e7ac4608d996f57b6f380748a919b457cb05bb941467b888b22", | |||
| "sha256:4e2cd80e16f481a62c3175b607373200e714ed29025f21559ebf7524f295689f", | |||
| "sha256:52732960efa0e003ca1c092dc0a3c65276e897681287a788a01ca78dda3b41f0", | |||
| "sha256:55a7de51ec7d1731b2431886d0349146645f2816e5b8eb982d7c49f89472c9f3", | |||
| "sha256:5f8ed5934197a2d4b2087646e98de3e099a237099dcf498b9e38dd3465f74ef4", | |||
| "sha256:64b064124fcbc8eb04a155117dc4d9a336e3cda3f069958fbc44fe70c3c3d1e9", | |||
| "sha256:65958b8e4319f992e85dad59d8081888b97fcdbde5f0d14bc28f2848b92d3ef1", | |||
| "sha256:7683428862e20c6a790c19e64f8ccf487f613fbc83d47e3d532df9c81668d451", | |||
| "sha256:78566d5570c75a127c2491e343dc006798a384f06be588fe9b0cbe5595711559", | |||
| "sha256:7d1cb00c093dbf1d0b16ccf123e79dee3b82608e4a2a88947695f0460eef13ff", | |||
| "sha256:8c74e2a9b594f7962c62cef7680a4cb92a96b4e6e3c2f970790da67cc0213a7e", | |||
| "sha256:8e60aa7699170f55f4b0f56ee6f8415229777ac7e4b4b1aa41fc61eec08c1f1d", | |||
| "sha256:9447b561529576d89d3bf973e5241a88cf76e45bd101963f5236888713dea774", | |||
| "sha256:970055bfeb0be373f2f5299a3db8432444bad3bc2f198753ee6c2a3a781e0959", | |||
| "sha256:a6344b8542e584e140dc3c651d68bde51270e79490aa9320f9e708f9b2c39bd5", | |||
| "sha256:ce309ca470d747b02ba6069d286a17b7df8e9c94d10d727d9cf3a64e51d85184", | |||
| "sha256:cfbd86ed4c2b2ac71bbdbcea6669bf295def7152e3722ddd9dda94ac7981f33d", | |||
| "sha256:d7929c513732dff093481f4a0954ed5ff16816365842136b17caa0b4992e49d3" | |||
| ], | |||
| "index": "pypi", | |||
| "version": "==3.7.2" | |||
| }, | |||
| "pyparsing": { | |||
| "hashes": [ | |||
| "sha256:66c9268862641abcac4a96ba74506e594c884e3f57690a696d21ad8210ed667a", | |||
| "sha256:f6c5ef0d7480ad048c054c37632c67fca55299990fff127850181659eea33fc3" | |||
| ], | |||
| "version": "==2.3.1" | |||
| }, | |||
| "pysocks": { | |||
| "hashes": [ | |||
| "sha256:3fe52c55890a248676fd69dc9e3c4e811718b777834bcaab7a8125cf9deac672" | |||
| ], | |||
| "version": "==1.6.8" | |||
| }, | |||
| "python-dateutil": { | |||
| "hashes": [ | |||
| "sha256:7e6584c74aeed623791615e26efd690f29817a27c73085b78e4bad02493df2fb", | |||
| "sha256:c89805f6f4d64db21ed966fda138f8a5ed7a4fdbc1a8ee329ce1b74e3c74da9e" | |||
| ], | |||
| "version": "==2.8.0" | |||
| }, | |||
| "pytz": { | |||
| "hashes": [ | |||
| "sha256:32b0891edff07e28efe91284ed9c31e123d84bea3fd98e1f72be2508f43ef8d9", | |||
| "sha256:d5f05e487007e29e03409f9398d074e158d920d36eb82eaf66fb1136b0c5374c" | |||
| ], | |||
| "version": "==2018.9" | |||
| }, | |||
| "requests": { | |||
| "extras": [ | |||
| "socks" | |||
| ], | |||
| "hashes": [ | |||
| "sha256:502a824f31acdacb3a35b6690b5fbf0bc41d63a24a45c4004352b0242707598e", | |||
| "sha256:7bf2a778576d825600030a110f3c0e3e8edc51dfaafe1c146e39a2027784957b" | |||
| ], | |||
| "version": "==2.21.0" | |||
| }, | |||
| "scipy": { | |||
| "hashes": [ | |||
| "sha256:014cb900c003b5ac81a53f2403294e8ecf37aedc315b59a6b9370dce0aa7627a", | |||
| "sha256:281a34da34a5e0de42d26aed692ab710141cad9d5d218b20643a9cb538ace976", | |||
| "sha256:588f9cc4bfab04c45fbd19c1354b5ade377a8124d6151d511c83730a9b6b2338", | |||
| "sha256:5a10661accd36b6e2e8855addcf3d675d6222006a15795420a39c040362def66", | |||
| "sha256:628f60be272512ca1123524969649a8cb5ae8b31cca349f7c6f8903daf9034d7", | |||
| "sha256:6dcc43a88e25b815c2dea1c6fac7339779fc988f5df8396e1de01610604a7c38", | |||
| "sha256:70e37cec0ac0fe95c85b74ca4e0620169590fd5d3f44765f3c3a532cedb0e5fd", | |||
| "sha256:7274735fb6fb5d67d3789ddec2cd53ed6362539b41aa6cc0d33a06c003aaa390", | |||
| "sha256:78e12972e144da47326958ac40c2bd1c1cca908edc8b01c26a36f9ffd3dce466", | |||
| "sha256:790cbd3c8d09f3a6d9c47c4558841e25bac34eb7a0864a9def8f26be0b8706af", | |||
| "sha256:79792c8fe8e9d06ebc50fe23266522c8c89f20aa94ac8e80472917ecdce1e5ba", | |||
| "sha256:865afedf35aaef6df6344bee0de391ee5e99d6e802950a237f9fb9b13e441f91", | |||
| "sha256:870fd401ec7b64a895cff8e206ee16569158db00254b2f7157b4c9a5db72c722", | |||
| "sha256:963815c226b29b0176d5e3d37fc9de46e2778ce4636a5a7af11a48122ef2577c", | |||
| "sha256:9726791484f08e394af0b59eb80489ad94d0a53bbb58ab1837dcad4d58489863", | |||
| "sha256:9de84a71bb7979aa8c089c4fb0ea0e2ed3917df3fb2a287a41aaea54bbad7f5d", | |||
| "sha256:b2c324ddc5d6dbd3f13680ad16a29425841876a84a1de23a984236d1afff4fa6", | |||
| "sha256:b86ae13c597fca087cb8c193870507c8916cefb21e52e1897da320b5a35075e5", | |||
| "sha256:ba0488d4dbba2af5bf9596b849873102d612e49a118c512d9d302ceafa36e01a", | |||
| "sha256:d78702af4102a3a4e23bb7372cec283e78f32f5573d92091aa6aaba870370fe1", | |||
| "sha256:def0e5d681dd3eb562b059d355ae8bebe27f5cc455ab7c2b6655586b63d3a8ea", | |||
| "sha256:e085d1babcb419bbe58e2e805ac61924dac4ca45a07c9fa081144739e500aa3c", | |||
| "sha256:e2cfcbab37c082a5087aba5ff00209999053260441caadd4f0e8f4c2d6b72088", | |||
| "sha256:e742f1f5dcaf222e8471c37ee3d1fd561568a16bb52e031c25674ff1cf9702d5", | |||
| "sha256:f06819b028b8ef9010281e74c59cb35483933583043091ed6b261bb1540f11cc", | |||
| "sha256:f15f2d60a11c306de7700ee9f65df7e9e463848dbea9c8051e293b704038da60", | |||
| "sha256:f31338ee269d201abe76083a990905473987371ff6f3fdb76a3f9073a361cf37", | |||
| "sha256:f6b88c8d302c3dac8dff7766955e38d670c82e0d79edfc7eae47d6bb2c186594" | |||
| ], | |||
| "version": "==1.2.1" | |||
| }, | |||
| "seaborn": { | |||
| "hashes": [ | |||
| "sha256:42e627b24e849c2d3bbfd059e00005f6afbc4a76e4895baf44ae23fe8a4b09a5", | |||
| "sha256:76c83f794ca320fb6b23a7c6192d5e185a5fcf4758966a0c0a54baee46d41e2f" | |||
| ], | |||
| "index": "pypi", | |||
| "version": "==0.9.0" | |||
| }, | |||
| "six": { | |||
| "hashes": [ | |||
| "sha256:3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c", | |||
| "sha256:d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73" | |||
| ], | |||
| "version": "==1.12.0" | |||
| }, | |||
| "tqdm": { | |||
| "hashes": [ | |||
| "sha256:d385c95361699e5cf7622485d9b9eae2d4864b21cd5a2374a9c381ffed701021", | |||
| "sha256:e22977e3ebe961f72362f6ddfb9197cc531c9737aaf5f607ef09740c849ecd05" | |||
| ], | |||
| "index": "pypi", | |||
| "version": "==4.31.1" | |||
| }, | |||
| "urllib3": { | |||
| "hashes": [ | |||
| "sha256:61bf29cada3fc2fbefad4fdf059ea4bd1b4a86d2b6d15e1c7c0b582b9752fe39", | |||
| "sha256:de9529817c93f27c8ccbfead6985011db27bd0ddfcdb2d86f3f663385c6a9c22" | |||
| ], | |||
| "version": "==1.24.1" | |||
| } | |||
| }, | |||
| "develop": {} | |||
| } | |||
+ 38
- 5
SConstruct
View File
+ 36
- 0
collect_variable_degrees.py
View File
| @ -0,0 +1,36 @@ | |||
| #!/usr/bin/env python3 | |||
| import util.script as script | |||
| import mysql.connector | |||
| from util.kSAT import kSAT | |||
| def main(): | |||
| edb = script.connect_to_experimetns_db("database.config") | |||
| idb = script.connect_to_instance_pool("database.config")["experiments"] | |||
| cursor = edb.cursor() | |||
| insert_row = ("INSERT INTO degree_of_variables " | |||
| "(instance, variable, degree) " | |||
| "VALUES (%s, %s, %s)") | |||
| for instance in idb["instances"].find(): | |||
| sat = kSAT() | |||
| for clause in instance["clauses"]: | |||
| sat.addClause(clause) | |||
| for variable, degree in sat.getDegreesOfVariables().items(): | |||
| cursor.execute(insert_row, (str(instance["_id"]), variable, degree)) | |||
| edb.commit() | |||
| cursor.close() | |||
| edb.close() | |||
| if __name__ == "__main__": | |||
| main() | |||
+ 35
- 0
contrib/qubosolver/SConscript
View File
| @ -0,0 +1,35 @@ | |||
| import os | |||
| Import("globalEnv") | |||
| env = globalEnv.Clone() | |||
| env["QBSCXX_SRC"] = os.path.join(env["QBSCXXPATH"], "qbscxx") | |||
| cmake_build_path = os.path.join(env["QBSCXX_LIB_PATH"], "cmake_build") | |||
| if not os.path.exists(cmake_build_path): | |||
| os.makedirs(cmake_build_path) | |||
| if not os.path.exists(env["QBSCXX_LIB_PATH"]): | |||
| os.makedirs(env["QBSCXX_LIB_PATH"]) | |||
| cwd = os.getcwd() | |||
| os.chdir(cmake_build_path) | |||
| cmakeCall = "cmake -DCMAKE_BUILD_TYPE={} ".format(env["BUILD_TYPE"]) | |||
| #cmakeCall += "-DCMAKE_INSTALL_PREFIX=" + env["QBSCXX_LIB_PATH"] + " " | |||
| cmakeCall += env["QBSCXX_SRC"] | |||
| os.system(cmakeCall) | |||
| os.system("make") | |||
| #os.system("make install") | |||
| env.Install(env["QBSCXX_LIB_PATH"], [os.path.join("cmake_build", "libqbsolv.a")]) | |||
| os.chdir(cwd) | |||
+ 1
- 0
contrib/qubosolver/qbscxx
| @ -0,0 +1 @@ | |||
| Subproject commit a409dadcf62546c950bb09fa44d06830e0740faf | |||
+ 92
- 0
create_WMIS_QUBOS.py
View File
| @ -0,0 +1,92 @@ | |||
| #!/usr/bin/env python3 | |||
| from util.kSAT import kSAT | |||
| from util import SAT2QUBO | |||
| import util.script as scriptUtils | |||
| import pymongo | |||
| import ssl | |||
| import json | |||
| def main(): | |||
| args = __parseArguments() | |||
| dbContext = scriptUtils.getDBContext(args["dbConfigPath"]) | |||
| __createQubos(dbContext, args["experimentScope"]) | |||
| def __parseArguments(): | |||
| parser = scriptUtils.ArgParser() | |||
| parser.addArg(alias="experimentScope", shortFlag="s", longFlag="scope", | |||
| help="the experiment experiment scope of interest", type=str) | |||
| parser.addArg(alias="dbConfigPath", shortFlag="d", longFlag="db_config", | |||
| help="path to the database config file", type=str, | |||
| default="database.config") | |||
| return parser.parse() | |||
| def __createQubos(dbContext, experimentScope): | |||
| instances = __queryInstancs(dbContext["db"], experimentScope) | |||
| for instance in instances: | |||
| sat = kSAT() | |||
| for clause in instance["clauses"]: | |||
| sat.addClause(clause); | |||
| qubo = SAT2QUBO.WMISdictQUBO(sat) | |||
| doc = {} | |||
| doc["instance"] = instance["_id"] | |||
| doc["description"] = {"<qubo>": "<entrys>", | |||
| "<entrys>": "<entry><entrys> | <entry> | \"\"", | |||
| "<entry>": "<coupler><energy>", | |||
| "<energy>": "<real_number>", | |||
| "<coupler>": "<node><node>", | |||
| "<node>": "<clause><literal>", | |||
| "<clause>": "<natural_number>", | |||
| "<literal>": "<integer>"} | |||
| doc["qubo"] = __qubo2JSON(qubo) | |||
| dbContext["db"]["wmis_qubos"].insert_one(doc) | |||
| def __qubo2JSON(qubo): | |||
| quboJSON = [] | |||
| for coupler, value in qubo.items(): | |||
| quboJSON.append([coupler, float(value)]) | |||
| return quboJSON | |||
| def __queryInstancs(db, experimentScope): | |||
| return db["experiment_scopes"].aggregate([ | |||
| { | |||
| "$match": {"_id": experimentScope} | |||
| }, | |||
| { | |||
| "$unwind": "$instances" | |||
| }, | |||
| { | |||
| "$lookup": | |||
| { | |||
| "from": "instances", | |||
| "localField": "instances", | |||
| "foreignField": "_id", | |||
| "as": "instance" | |||
| } | |||
| }, | |||
| { | |||
| "$unwind": "$instance" | |||
| }, | |||
| { | |||
| "$replaceRoot": {"newRoot": "$instance"} | |||
| } | |||
| ]) | |||
| if __name__ == "__main__": | |||
| main() | |||
+ 1
- 61
generateRandomKsatDataSet_db.py
View File
+ 23
- 0
queryInstancesFromScope.js
View File
| @ -0,0 +1,23 @@ | |||
| db.getCollection("experiment_scopes").aggregate([ | |||
| { | |||
| $match: {_id: "test"} | |||
| }, | |||
| { | |||
| $unwind : "$instances" | |||
| }, | |||
| { | |||
| $lookup: | |||
| { | |||
| from: "instances", | |||
| localField: "instances", | |||
| foreignField: "_id", | |||
| as: "instance" | |||
| } | |||
| }, | |||
| { | |||
| $unwind: "$instance" | |||
| }, | |||
| { | |||
| $replaceRoot: {newRoot: "$instance"} | |||
| } | |||
| ]) | |||
+ 77
- 0
query_req_data_for_solving.js
View File
| @ -0,0 +1,77 @@ | |||
| db.getCollection('experiment_scopes').aggregate( | |||
| [ | |||
| { | |||
| $match: {_id: "c50_v[5, 50]_1"} | |||
| }, | |||
| { | |||
| $unwind: "$instances" | |||
| }, | |||
| { | |||
| $project: {"instance_id": "$instances"} | |||
| }, | |||
| { | |||
| $lookup: | |||
| { | |||
| from: "wmis_qubos", | |||
| localField: "instance_id", | |||
| foreignField: "instance", | |||
| as: "wmis_qubo" | |||
| } | |||
| }, | |||
| { | |||
| $unwind: "$wmis_qubo" | |||
| }, | |||
| { | |||
| $lookup: | |||
| { | |||
| from: "embeddings", | |||
| let: | |||
| { | |||
| qubo_id: "$wmis_qubo._id", | |||
| solver_graph_id: ObjectId("5c9e13168c6fe628c16eb361") | |||
| }, | |||
| pipeline: | |||
| [ | |||
| { | |||
| $match: | |||
| { | |||
| $expr: | |||
| { | |||
| $and: | |||
| [ | |||
| {$eq: ["$qubo", "$$qubo_id"]}, | |||
| {$eq: ["$solver_graph", "$$solver_graph_id"]} | |||
| ] | |||
| } | |||
| } | |||
| }, | |||
| { | |||
| $project: | |||
| { | |||
| /*_id: false, | |||
| qubo: false, | |||
| solver_graph: false, | |||
| description: false*/ | |||
| embeddings: true | |||
| } | |||
| } | |||
| ], | |||
| as: "embeddings" | |||
| } | |||
| }, | |||
| { | |||
| $match: {embeddings: {$exists: true, $not: {$size: 0}}} | |||
| }, | |||
| { | |||
| $unwind: "$embeddings" | |||
| }, | |||
| { | |||
| $project: | |||
| { | |||
| _id: false, | |||
| instance_id: true, | |||
| wmis_qubo: true, | |||
| embeddings: "$embeddings.embeddings" | |||
| } | |||
| } | |||
| ]) | |||
+ 23
- 4
src/SConscript
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+ 2
- 3
src/runMinisat.cpp
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+ 161
- 0
src/runQbsolv.cpp
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| @ -0,0 +1,161 @@ | |||
| #include <iostream> | |||
| #include "solver_cxx.h" | |||
| #include "util/conversions.h" | |||
| #include "mongocxx/instance.hpp" | |||
| #include "mongocxx/client.hpp" | |||
| #include "mongocxx/database.hpp" | |||
| #include "mongocxx/collection.hpp" | |||
| #include "mongocxx/cursor.hpp" | |||
| #include "INIReader.h" | |||
| #include "util/wmis_qubo.h" | |||
| std::string getDbConfigFilePath(); | |||
| std::string getScopeName(); | |||
| std::string getDBUrl(); | |||
| mongocxx::client connectToDatabase(); | |||
| void print(const qbscxx::SOLUTION& solution, const satlab::wmis_qubo& qubo); | |||
| int main(int argc, char** argv) | |||
| { | |||
| mongocxx::instance inst{}; | |||
| mongocxx::client conn = connectToDatabase(); | |||
| mongocxx::database db = conn["experiments"]; | |||
| mongocxx::collection wmis_qubos = db["wmis_qubos"]; | |||
| std::cout << "runQbsolv" << std::endl; | |||
| satlab::wmis_qubo wmis_qubo; | |||
| for(auto& el : wmis_qubos.find({})) | |||
| { | |||
| satlab::types::convert(wmis_qubo, el); | |||
| qbscxx::Solver solver(wmis_qubo.get_qubo()); | |||
| solver.set_goal(qbscxx::Solver::GOAL::MAXIMUM); | |||
| solver.set_verbosity(-1); | |||
| solver.solve(); | |||
| print(solver.get_solution(), wmis_qubo); | |||
| std::cout << std::endl; | |||
| } | |||
| return 0; | |||
| } | |||
| mongocxx::client connectToDatabase() | |||
| { | |||
| mongocxx::options::ssl sslOptions; | |||
| sslOptions.allow_invalid_certificates(true); | |||
| mongocxx::options::client clientOptions{}; | |||
| clientOptions.ssl_opts(sslOptions); | |||
| return mongocxx::client{mongocxx::uri{getDBUrl()}, clientOptions}; | |||
| } | |||
| std::string getDBUrl() | |||
| { | |||
| INIReader iniReader(getDbConfigFilePath()); | |||
| std::string connUrl("mongodb://"); | |||
| connUrl.append(iniReader.Get("CONNECTION", "user", "NA") + ":"); | |||
| connUrl.append(iniReader.Get("CONNECTION", "pw", "NA") + "@"); | |||
| connUrl.append(iniReader.Get("CONNECTION", "url", "NA") + ":"); | |||
| connUrl.append(iniReader.Get("CONNECTION", "port", "NA") + "/"); | |||
| connUrl.append(iniReader.Get("CONNECTION", "database", "NA")); | |||
| connUrl.append("?ssl=true"); | |||
| return connUrl; | |||
| } | |||
| std::string getDbConfigFilePath() | |||
| { | |||
| std::cout << "Database config file: "; | |||
| std::string path; | |||
| std::cin >> path; | |||
| return path; | |||
| } | |||
| std::string getScopeName() | |||
| { | |||
| std::cout << "Experiment scope: "; | |||
| std::string scope; | |||
| std::cin >> scope; | |||
| return scope; | |||
| } | |||
| void print(const qbscxx::SOLUTION& solution, const satlab::wmis_qubo& qubo) | |||
| { | |||
| qbscxx::ENERGY_T resulution_energy = 0; | |||
| for(int val : solution) | |||
| { | |||
| resulution_energy += val; | |||
| std::cout << val; | |||
| } | |||
| std::cout << " " << resulution_energy << std::endl; | |||
| std::vector<bool> model; | |||
| int conflicts = 0; | |||
| for(int i = 0; i < solution.size(); i++) | |||
| { | |||
| auto node = qubo.node_at(i); | |||
| int lit = std::get<1>(node); | |||
| size_t var = std::abs(lit); | |||
| bool newVar = false; | |||
| if(model.size() < var) | |||
| { | |||
| newVar = true; | |||
| model.resize(var); | |||
| } | |||
| bool binding; | |||
| if(solution[i] == 0) | |||
| { | |||
| binding = lit < 0 ? true : false; | |||
| } | |||
| else | |||
| { | |||
| binding = lit < 0 ? false : true; | |||
| } | |||
| if(!newVar && binding != model[var - 1]) | |||
| { | |||
| conflicts++; | |||
| } | |||
| model[var - 1] = binding; | |||
| } | |||
| for(int i=0; i < model.size(); i++) | |||
| { | |||
| int var = i + 1; | |||
| std::cout << (model[i] ? var : -1 * var) << " "; | |||
| } | |||
| std::cout << std::endl; | |||
| } | |||
+ 2
- 4
src/util/bson2ksatClauseConverter.h
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+ 7
- 6
src/util/bson2ksatConverter.h
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+ 85
- 0
src/util/bson2quboMtrx.h
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| @ -0,0 +1,85 @@ | |||
| #ifndef BSON2QBUO_MTRX_H | |||
| #define BSON2QBUO_MTRX_H | |||
| #include "bsoncxx/document/view.hpp" | |||
| #include "bsoncxx/array/view.hpp" | |||
| #include "bsoncxx/types.hpp" | |||
| #include "util/convert.h" | |||
| #include "solver_cxx.h" | |||
| #include <iostream> | |||
| #include "bsoncxx/json.hpp" | |||
| #include <map> | |||
| #include <unordered_map> | |||
| #include <tuple> | |||
| namespace satlab | |||
| { | |||
| namespace types | |||
| { | |||
| template<typename = qbscxx::QUBO, typename = bsoncxx::document::view> | |||
| void convert(qbscxx::QUBO& qubo, const bsoncxx::document::view& docView) | |||
| { | |||
| using NODE = std::tuple<int, int>; | |||
| using NODE_INDEX_DICT = std::map<NODE, size_t>; | |||
| //qubo = qbscxx::QUBO(); | |||
| NODE_INDEX_DICT nodeIndexDict; | |||
| NODE node1; | |||
| size_t nodeIndex = 0; | |||
| for(auto& entry : docView["qubo"].get_array().value) | |||
| { | |||
| for(auto& nodeView : entry[0].get_array().value) | |||
| { | |||
| node1 = NODE(nodeView[0].get_int32().value, | |||
| nodeView[1].get_int32().value); | |||
| if(nodeIndexDict.find( node1 ) == nodeIndexDict.end()) | |||
| { | |||
| nodeIndexDict.emplace(node1, nodeIndex); | |||
| nodeIndex++; | |||
| } | |||
| } | |||
| } | |||
| qubo.resize(nodeIndexDict.size()); | |||
| for(int i=0; i < nodeIndexDict.size(); i++) | |||
| { | |||
| qubo[i].resize(nodeIndexDict.size()); | |||
| } | |||
| NODE node2; | |||
| for(auto& entry : docView["qubo"].get_array().value) | |||
| { | |||
| auto coupler = entry[0]; | |||
| auto node1doc = coupler[0]; | |||
| auto node2doc = coupler[1]; | |||
| node1 = NODE(node1doc[0].get_int32().value, | |||
| node1doc[1].get_int32().value); | |||
| node2 = NODE(node2doc[0].get_int32().value, | |||
| node2doc[1].get_int32().value); | |||
| size_t nodeIndex1 = nodeIndexDict.at(node1); | |||
| size_t nodeIndex2 = nodeIndexDict.at(node2); | |||
| qbscxx::ENERGY_T energy = entry[1].get_double().value; | |||
| qubo[nodeIndex1][nodeIndex2] = energy; | |||
| } | |||
| nodeIndexDict.clear(); | |||
| } | |||
| } | |||
| } | |||
| #endif // BSON2QBUO_MTRX_H | |||
+ 43
- 0
src/util/bson_2_qubo_coupler.h
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| @ -0,0 +1,43 @@ | |||
| #ifndef BSON_2_QUBO_COUPLER_H | |||
| #define BSON_2_QUBO_COUPLER_H | |||
| #include "bsoncxx/document/view.hpp" | |||
| #include "bsoncxx/array/view.hpp" | |||
| #include "bsoncxx/types.hpp" | |||
| #include "util/convert.h" | |||
| #include <map> | |||
| #include <unordered_map> | |||
| #include <tuple> | |||
| #include "util/wmis_qubo.h" | |||
| namespace satlab | |||
| { | |||
| namespace types | |||
| { | |||
| template<typename = wmis_qubo::COUPLER, typename = bsoncxx::array::view> | |||
| void convert(wmis_qubo::COUPLER& coupler, const bsoncxx::array::view& docView) | |||
| { | |||
| auto nodes = docView[0].get_array().value; | |||
| wmis_qubo::NODE node1(nodes[0][0].get_int32().value, | |||
| nodes[0][1].get_int32().value); | |||
| wmis_qubo::NODE node2(nodes[1][0].get_int32().value, | |||
| nodes[1][1].get_int32().value); | |||
| qbscxx::ENERGY_T energy = docView[1].get_double().value; | |||
| coupler = wmis_qubo::COUPLER(node1, node2, energy); | |||
| } | |||
| } | |||
| } | |||
| #endif // BSON_2_QUBO_COUPLER_H | |||
+ 47
- 0
src/util/bson_2_wmis_qubo.h
View File
| @ -0,0 +1,47 @@ | |||
| #ifndef BSON_2_WMIS_QUBO_H | |||
| #define BSON_2_WMIS_QUBO_H | |||
| #include "bsoncxx/document/view.hpp" | |||
| #include "bsoncxx/array/view.hpp" | |||
| #include "bsoncxx/types.hpp" | |||
| #include "util/convert.h" | |||
| #include <iostream> | |||
| #include "bsoncxx/json.hpp" | |||
| #include <map> | |||
| #include <unordered_map> | |||
| #include <tuple> | |||
| #include "util/wmis_qubo.h" | |||
| #include "util/bson_2_qubo_coupler.h" | |||
| namespace satlab | |||
| { | |||
| namespace types | |||
| { | |||
| template<typename = wmis_qubo, typename = bsoncxx::document::view> | |||
| void convert(wmis_qubo& qubo, const bsoncxx::document::view& docView) | |||
| { | |||
| qubo = wmis_qubo(); | |||
| for(auto& entry : docView["qubo"].get_array().value) | |||
| { | |||
| wmis_qubo::COUPLER coupler; | |||
| convert(coupler, entry.get_array().value); | |||
| qubo.add(coupler); | |||
| } | |||
| } | |||
| } | |||
| } | |||
| #endif // BSON_2_WMIS_QUBO_H | |||
+ 2
- 0
src/util/conversions.h
View File
+ 3
- 3
src/util/convert.h
View File
+ 2
- 2
src/util/ksatClause2ministaClause.h
View File
+ 2
- 4
src/util/ksatModel2bson.h
View File
+ 10
- 6
src/util/minisatResult2bson.h
View File
+ 2
- 4
src/util/minisatStats2bson.h
View File
+ 1
- 1
src/util/minisatsolver.cpp
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+ 1
- 1
src/util/mongodbexperimentscope.cpp
View File
+ 79
- 0
src/util/wmis_qubo.cpp
View File
| @ -0,0 +1,79 @@ | |||
| #include "util/wmis_qubo.h" | |||
| #include <algorithm> | |||
| namespace satlab | |||
| { | |||
| void wmis_qubo::add(const COUPLER& coupler) | |||
| { | |||
| const NODE& node1 = std::get<0>(coupler); | |||
| const NODE& node2 = std::get<1>(coupler); | |||
| qbscxx::ENERGY_T energy = std::get<2>(coupler); | |||
| size_t index_node1 = add(node1); | |||
| size_t index_node2 = add(node2); | |||
| fit_qubo(std::max(index_node1, index_node2)); | |||
| qubo[index_node1][index_node2] = energy; | |||
| qubo[index_node2][index_node1] = energy; | |||
| } | |||
| size_t wmis_qubo::add(const NODE& node) | |||
| { | |||
| size_t index; | |||
| if(node_to_index.find(node) == node_to_index.end()) | |||
| { | |||
| index_to_node.push_back(node); | |||
| index = index_to_node.size() - 1; | |||
| node_to_index.emplace(node, index); | |||
| } | |||
| else | |||
| { | |||
| index = index_of(node); | |||
| } | |||
| return index; | |||
| } | |||
| void wmis_qubo::fit_qubo(const size_t node_index) | |||
| { | |||
| size_t required_size = node_index + 1; | |||
| if(qubo.size() >= required_size) | |||
| { | |||
| return; | |||
| } | |||
| size_t old_size = qubo.size(); | |||
| qubo.resize(required_size); | |||
| for(size_t i=0; i < required_size; i++) | |||
| { | |||
| qubo[i].resize(required_size); | |||
| std::fill(qubo[i].begin() + old_size, qubo[i].end(), 0.0); | |||
| } | |||
| } | |||
| size_t wmis_qubo::index_of(const NODE& node) const | |||
| { | |||
| return node_to_index.at(node); | |||
| } | |||
| const satlab::wmis_qubo::NODE& wmis_qubo::node_at(size_t index) const | |||
| { | |||
| return index_to_node.at(index); | |||
| } | |||
| const qbscxx::QUBO& wmis_qubo::get_qubo() const | |||
| { | |||
| return qubo; | |||
| } | |||
| } | |||
+ 52
- 0
src/util/wmis_qubo.h
View File
| @ -0,0 +1,52 @@ | |||
| #ifndef WMIS_QUBO_H | |||
| #define WMIS_QUBO_H | |||
| #include "types.h" | |||
| #include <map> | |||
| #include <tuple> | |||
| #include <vector> | |||
| namespace satlab | |||
| { | |||
| /** | |||
| * @todo write docs | |||
| */ | |||
| class wmis_qubo | |||
| { | |||
| public: | |||
| using NODE = std::tuple<int, int>; | |||
| using COUPLER = std::tuple<NODE, NODE, qbscxx::ENERGY_T>; | |||
| using INDEX_TO_NODE = std::vector<NODE>; | |||
| using NODE_TO_INDEX = std::map<NODE, size_t>; | |||
| wmis_qubo() = default; | |||
| virtual ~wmis_qubo() = default; | |||
| wmis_qubo(const wmis_qubo& other) = default; | |||
| wmis_qubo(wmis_qubo&& other) = default; | |||
| wmis_qubo& operator=(const wmis_qubo& other) = default; | |||
| wmis_qubo& operator=(wmis_qubo&& other) = default; | |||
| void add(const COUPLER& coupler); | |||
| const NODE& node_at(size_t index) const; | |||
| size_t index_of(const NODE& node) const; | |||
| const qbscxx::QUBO& get_qubo() const; | |||
| private: | |||
| size_t add(const NODE& node); | |||
| void fit_qubo(const size_t node_index); | |||
| qbscxx::QUBO qubo; | |||
| INDEX_TO_NODE index_to_node; | |||
| NODE_TO_INDEX node_to_index; | |||
| }; | |||
| } | |||
| #endif // WMIS_QUBO_H | |||
+ 47
- 11
testRandomSat.py
View File
| @ -1,23 +1,59 @@ | |||
| #!/usr/bin/env python3 | |||
| from util import randomSAT as rdSAT | |||
| import matplotlib.pyplot as plt | |||
| import seaborn as sns | |||
| import numpy as np | |||
| kSATInstance = rdSAT.generateRandomKSAT(5, 4, 3) | |||
| def test1(): | |||
| kSATInstance = rdSAT.generateRandomKSAT(5, 4, 3) | |||
| print(kSATInstance.toString()) | |||
| print(kSATInstance.toString()) | |||
| print("conflicts:") | |||
| print("conflicts:") | |||
| for conflict in kSATInstance.getConflicts(): | |||
| conflictVerified = False | |||
| for conflict in kSATInstance.getConflicts(): | |||
| conflictVerified = False | |||
| clause1 = kSATInstance.getClause(conflict[0][0]) | |||
| clause2 = kSATInstance.getClause(conflict[1][0]) | |||
| for binding in clause2: | |||
| if binding == conflict[0][1] * -1: | |||
| conflictVerified = True | |||
| print(conflict[0], conflict[1], conflictVerified) | |||
| clause1 = kSATInstance.getClause(conflict[0][0]) | |||
| clause2 = kSATInstance.getClause(conflict[1][0]) | |||
| def test2(): | |||
| data = {} | |||
| for binding in clause2: | |||
| if binding == conflict[0][1] * -1: | |||
| conflictVerified = True | |||
| data["clause"] = [] | |||
| data["num"] = [] | |||
| data["labels"] = [] | |||
| for i in range(10000): | |||
| sat = rdSAT.generateRandomKSAT(7, 6, 3) | |||
| for ci in range(sat.getNumberOfClauses()): | |||
| clause = sat.getClause(ci) | |||
| clause = list(np.sort(clause)) | |||
| print(conflict[0], conflict[1], conflictVerified) | |||
| if clause in data["clause"]: | |||
| clauseIndex = data["clause"].index(clause) | |||
| data["num"][clauseIndex] += 1 | |||
| else: | |||
| data["clause"].append(clause) | |||
| data["labels"].append("[{}, {}, {}]".format(clause[0], clause[1], clause[2])) | |||
| data["num"].append(1) | |||
| print("done ({}) unique clauses".format(len(data["clause"]))) | |||
| sns.set() | |||
| sns.barplot(x=data["labels"], y=data["num"]) | |||
| plt.show() | |||
| test2() | |||
+ 395
- 5
testSAT2QUBO.py
View File
+ 50
- 0
test_alpha_generation.py
View File
| @ -0,0 +1,50 @@ | |||
| #!/usr/bin/env python3 | |||
| import matplotlib.pyplot as plt | |||
| import seaborn as sns | |||
| import numpy as np | |||
| import random | |||
| from util.script import frange | |||
| from collections import Counter | |||
| def main(): | |||
| #alpha_range = frange(0.5, 10, 0.1) | |||
| #k = 50 | |||
| #alphas = _get_bins(k, alpha_range) | |||
| alphas = [] | |||
| k = 25 | |||
| for v in range(5, 50): | |||
| alphas.append(round(k/v, 2)) | |||
| num_bins =len(np.unique(alphas)) | |||
| print(num_bins) | |||
| sns.set() | |||
| plt.hist(alphas, bins=num_bins) | |||
| plt.show() | |||
| def _get_bins(k, alpha_range): | |||
| bins = {} | |||
| alphas = [] | |||
| for a in alpha_range: | |||
| v = int(k/a) | |||
| real_alpha = (k / v) | |||
| alphas.append(round(real_alpha, 2)) | |||
| return alphas | |||
| if __name__ == "__main__": | |||
| main() | |||
+ 252
- 0
test_sat_to_qubo_workflow.py
View File
| @ -0,0 +1,252 @@ | |||
| #!/usr/bin/env python3 | |||
| from util.kSAT import kSAT | |||
| import util.randomSAT as rand_sat | |||
| import util.SAT2QUBO as SAT2QUBO | |||
| import util.script as script | |||
| import util.queries as queries | |||
| from dwave.system.composites import FixedEmbeddingComposite | |||
| import dimod | |||
| from neal import SimulatedAnnealingSampler | |||
| import minorminer | |||
| import networkx as nx | |||
| import dwave_networkx as dnx | |||
| import dwave.embedding | |||
| from dwave_qbsolv import QBSolv | |||
| import numpy as np | |||
| import random | |||
| from tqdm import tqdm | |||
| def main(): | |||
| #__wmis() | |||
| #__pqubo() | |||
| __wmis3() | |||
| def __qubo_to_nx_graph(qubo): | |||
| graph = nx.Graph() | |||
| for coupler, energy in qubo.items(): | |||
| if coupler[0] != coupler[1]: | |||
| graph.add_edge(coupler[0], coupler[1], weight=energy) | |||
| return graph | |||
| def __wmis2(): | |||
| db = script.connect_to_instance_pool("dbc") | |||
| target_graph = dnx.chimera_graph(16, 16, 4) | |||
| target_graph_id = queries.get_id_of_solver_graph(db["solver_graphs"], | |||
| nx.node_link_data(target_graph)) | |||
| instance_id = "5c9ccb998c6fe61926458351" | |||
| qubo, wmis_id = queries.load_WMIS_qubo_of_instance(db["wmis_qubos"], instance_id) | |||
| emb = queries.load_embedding(db["embeddings"], wmis_id, target_graph_id) | |||
| chimera_sampler = dimod.StructureComposite(SimulatedAnnealingSampler(), | |||
| target_graph.nodes(), | |||
| target_graph.edges()) | |||
| sampler = FixedEmbeddingComposite(chimera_sampler, emb) | |||
| res = sampler.sample_qubo(__negate_qubo(qubo)) | |||
| print(res.first) | |||
| def __wmis3(): | |||
| db = script.connect_to_instance_pool("dbc") | |||
| target_graph = dnx.chimera_graph(16, 16, 4) | |||
| target_graph_id = queries.get_id_of_solver_graph(db["solver_graphs"], | |||
| nx.node_link_data(target_graph)) | |||
| solver_input_query = queries.WMIS_solver_input_scope_query(db) | |||
| solver_input_query.query("c50_v[5, 50]_1", target_graph_id) | |||
| base_sampler = SimulatedAnnealingSampler() | |||
| chimera_sampler = dimod.StructureComposite(base_sampler, | |||
| target_graph.nodes(), | |||
| target_graph.edges()) | |||
| for solver_input in tqdm(solver_input_query): | |||
| sampler = FixedEmbeddingComposite(chimera_sampler, solver_input["embeddings"][0]) | |||
| res = sampler.sample_qubo(__negate_qubo(solver_input["qubo"])) | |||
| script.save_simulated_annealing_result(db["wmis_siman_results"], | |||
| res, | |||
| solver_input, | |||
| 0) | |||
| def __wmis(): | |||
| sat = rand_sat.generateRandomKSAT(25, 6, 3) | |||
| qubo = __negate_qubo(SAT2QUBO.WMISdictQUBO(sat)) | |||
| #qubo = SAT2QUBO.WMISdictQUBO(sat) | |||
| nx_qubo = __qubo_to_nx_graph(qubo) | |||
| target_graph = dnx.chimera_graph(16, 16, 4) | |||
| emb = minorminer.find_embedding(nx_qubo.edges(), | |||
| target_graph.edges(), | |||
| return_overlap=True) | |||
| if emb[1] != 1: | |||
| print("no embedding found") | |||
| return | |||
| print(emb[0]) | |||
| chimera_sampler = dimod.StructureComposite(SimulatedAnnealingSampler(), | |||
| target_graph.nodes(), | |||
| target_graph.edges()) | |||
| sampler = FixedEmbeddingComposite(chimera_sampler, emb[0]) | |||
| res = sampler.sample_qubo(qubo) | |||
| #res = SimulatedAnnealingSampler().sample_qubo(qubo) | |||
| #dwave.embedding.chain_breaks.majority_vote(res, emb[0]) | |||
| first = res.first | |||
| print("chain_break_fraction={}".format(first.chain_break_fraction)) | |||
| for lit, spin in first.sample.items(): | |||
| print(lit, spin) | |||
| print("true count: {}".format(np.count_nonzero(list(first.sample.values())))) | |||
| assignments = {} | |||
| for coupler, energy in first.sample.items(): | |||
| var = abs(coupler[1]) | |||
| if var not in assignments: | |||
| assignments[var] = {"all": []} | |||
| if energy == 1: | |||
| assignments[var]["all"].append(1 if coupler[1] > 0 else 0) | |||
| __majority_vote(assignments) | |||
| #for var, a in assignments.items(): | |||
| ##print(var, np.sort(a["all"]), __majority_percentage(a["all"])) | |||
| #print(var, a) | |||
| final = __extract_assignment(assignments) | |||
| print(final) | |||
| print("satisfies sat: {}".format(sat.checkAssignment(final))) | |||
| def __optimize_assignment(sat, assignment, consistencies): | |||
| rnd = random.Random() | |||
| max_steps = 4000 | |||
| steps = 0 | |||
| while not sat.checkAssignment(assignment) and steps < max_steps: | |||
| steps += 1 | |||
| for i in range(len(assignment)): | |||
| if 0.9 * rnd.random() > consistencies[i]: | |||
| assignment[i] = (1 + assignment[i]) % 2 | |||
| consistencies[i] = 1 - consistencies[i] | |||
| print("steps: {}".format(steps)) | |||
| return assignment | |||
| def __random_assignment(number_of_variables): | |||
| rnd = random.Random() | |||
| assignment = [rnd.choice([0, 1]) for i in range(number_of_variables)] | |||
| consistencies = [0.5 for i in range(number_of_variables)] | |||
| return assignment, consistencies | |||
| def __extract_assignment(assignments): | |||
| assignment = [0 for i in range(len(assignments))] | |||
| for var, a in assignments.items(): | |||
| assignment[var - 1] = a["major"] | |||
| return assignment | |||
| def __extract_consistencies(assignments) : | |||
| consistencies = [0.0 for i in range(len(assignments))] | |||
| for var, a in assignments.items(): | |||
| consistencies[var - 1] = a["consistency"] | |||
| return consistencies | |||
| def __majority_vote(assignments): | |||
| for var, a in assignments.items(): | |||
| assignments[var]["major"] = 1 if __true_percentage(a["all"]) >= 0.5 else 0 | |||
| assignments[var]["consistency"] = __majority_percentage(a["all"]) | |||
| def __true_percentage(a): | |||
| if len(a) == 0: | |||
| return 0 | |||
| return np.count_nonzero(a) / len(a) | |||
| def __majority_percentage(a): | |||
| true_perc = __true_percentage(a) | |||
| return true_perc if true_perc >= 0.5 else 1 - true_perc | |||
| def __pqubo(): | |||
| sat = rand_sat.generateRandomKSAT(25, 6, 3) | |||
| ising = SAT2QUBO.primitiveQUBO(sat) | |||
| nx_qubo = __qubo_to_nx_graph(ising) | |||
| target_graph = dnx.chimera_graph(16, 16, 4) | |||
| emb = minorminer.find_embedding(nx_qubo.edges(), | |||
| target_graph.edges(), | |||
| return_overlap=True) | |||
| if emb[1] != 1: | |||
| print("no embedding found") | |||
| return | |||
| chimera_sampler = dimod.StructureComposite(SimulatedAnnealingSampler(), | |||
| target_graph.nodes(), | |||
| target_graph.edges()) | |||
| sampler = FixedEmbeddingComposite(chimera_sampler, emb[0]) | |||
| h, J = __split_ising(ising) | |||
| res = sampler.sample_ising(h, J) | |||
| #res = QBSolv().sample_qubo(qubo, find_max=True) | |||
| print(res.first) | |||
| def __split_ising(ising): | |||
| h = {} | |||
| J = {} | |||
| for coupler, energy in ising.items(): | |||
| if coupler[0] == coupler[1]: | |||
| h[coupler[0]] = energy | |||
| else: | |||
| J[coupler] = energy | |||
| return h, J | |||
| def __negate_qubo(qubo): | |||
| negative_qubo = {} | |||
| for coupler, energy in qubo.items(): | |||
| negative_qubo[coupler] = -1 * energy | |||
| return negative_qubo | |||
| if __name__ == "__main__": | |||
| main() | |||
+ 71
- 1
util/SAT2QUBO.py
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+ 18
- 0
util/graph.py
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| @ -0,0 +1,18 @@ | |||
| import networkx as nx | |||
| def qubo_to_nx_graph(qubo): | |||
| graph = nx.Graph() | |||
| for coupler, energy in qubo.items(): | |||
| if coupler[0] != coupler[1]: | |||
| graph.add_edge(coupler[0], coupler[1], weight=energy) | |||
| return graph | |||
| def negate_qubo(qubo): | |||
| negative_qubo = {} | |||
| for coupler, energy in qubo.items(): | |||
| negative_qubo[coupler] = -1 * energy | |||
| return negative_qubo | |||
+ 10
- 2
util/kSAT.py
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+ 264
- 0
util/queries.py
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| @ -0,0 +1,264 @@ | |||
| from .kSAT import kSAT | |||
| import bson | |||
| class Instance_scope_query: | |||
| def __init__(self, database): | |||
| self.__database = database | |||
| self.__query = None | |||
| def query(self, scope): | |||
| self.__query = self.__database["experiment_scopes"].aggregate([ | |||
| { | |||
| "$match": {"_id": scope} | |||
| }, | |||
| { | |||
| "$unwind": "$instances" | |||
| }, | |||
| { | |||
| "$lookup": | |||
| { | |||
| "from": "instances", | |||
| "localField": "instances", | |||
| "foreignField": "_id", | |||
| "as": "instance" | |||
| } | |||
| }, | |||
| { | |||
| "$unwind": "$instance" | |||
| }, | |||
| { | |||
| "$replaceRoot": {"newRoot": "$instance"} | |||
| } | |||
| ]) | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| document = self.__query.next() | |||
| return self.__document_to_sat(document) | |||
| def __document_to_sat(self, document): | |||
| sat = kSAT() | |||
| for clause in document["clauses"]: | |||
| sat.addClause(clause); | |||
| return sat, document["_id"] | |||
| class WMIS_scope_query_raw: | |||
| def __init__(self, database): | |||
| self.__database = database | |||
| self.__query = None | |||
| def query(self, scope): | |||
| self.__query = self.__database["experiment_scopes"].aggregate([ | |||
| { | |||
| "$match": {"_id": scope} | |||
| }, | |||
| { | |||
| "$unwind": "$instances" | |||
| }, | |||
| { | |||
| "$lookup": | |||
| { | |||
| "from": "wmis_qubos", | |||
| "localField": "instances", | |||
| "foreignField": "instance", | |||
| "as": "qubo" | |||
| } | |||
| }, | |||
| { | |||
| "$unwind": "$qubo" | |||
| }, | |||
| { | |||
| "$replaceRoot": {"newRoot": "$qubo"} | |||
| } | |||
| ]) | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| return self.__query.next() | |||
| class WMIS_scope_query (WMIS_scope_query_raw): | |||
| def __next__(self): | |||
| doc = super(WMIS_scope_query, self).__next__() | |||
| return read_raw_qubo(doc["qubo"]), doc["_id"] | |||
| class WMIS_solver_input_scope_query_raw: | |||
| def __init__(self, database): | |||
| self.__database = database | |||
| self.__query = None | |||
| def query(self, scope, solver_graph_id): | |||
| self.__query = self.__database["experiment_scopes"].aggregate([ | |||
| { | |||
| "$match": {"_id": scope} | |||
| }, | |||
| { | |||
| "$unwind": "$instances" | |||
| }, | |||
| { | |||
| "$project": {"instance_id": "$instances"} | |||
| }, | |||
| { | |||
| "$lookup": | |||
| { | |||
| "from": "wmis_qubos", | |||
| "localField": "instance_id", | |||
| "foreignField": "instance", | |||
| "as": "wmis_qubo" | |||
| } | |||
| }, | |||
| { | |||
| "$unwind": "$wmis_qubo" | |||
| }, | |||
| { | |||
| "$lookup": | |||
| { | |||
| "from": "embeddings", | |||
| "let": | |||
| { | |||
| "qubo_id": "$wmis_qubo._id", | |||
| "solver_graph_id": bson.ObjectId(solver_graph_id) | |||
| }, | |||
| "pipeline": | |||
| [ | |||
| { | |||
| "$match": | |||
| { | |||
| "$expr": | |||
| { | |||
| "$and": | |||
| [ | |||
| {"$eq": ["$qubo", "$$qubo_id"]}, | |||
| {"$eq": ["$solver_graph", "$$solver_graph_id"]} | |||
| ] | |||
| } | |||
| } | |||
| }, | |||
| { | |||
| "$project": { "list": "$embeddings" } | |||
| } | |||
| ], | |||
| "as": "embeddings" | |||
| } | |||
| }, | |||
| { | |||
| "$match": {"embeddings": {"$exists": True, "$not": {"$size": 0}}} | |||
| }, | |||
| { | |||
| "$unwind": "$embeddings" | |||
| }, | |||
| { | |||
| "$project": | |||
| { | |||
| "_id": False, | |||
| "instance_id": True, | |||
| "wmis_qubo": True, | |||
| "embeddings": True | |||
| } | |||
| } | |||
| ]) | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| return self.__query.next() | |||
| class WMIS_solver_input_scope_query (WMIS_solver_input_scope_query_raw): | |||
| def __next__(self): | |||
| doc = super(WMIS_solver_input_scope_query, self).__next__() | |||
| data = {} | |||
| data["instance_id"] = doc["instance_id"] | |||
| data["qubo_id"] = doc["wmis_qubo"]["_id"] | |||
| data["qubo"] = read_raw_qubo(doc["wmis_qubo"]["qubo"]) | |||
| data["embeddings_id"] = doc["embeddings"]["_id"] | |||
| data["embeddings"] = [] | |||
| for raw_emb in doc["embeddings"]["list"]: | |||
| data["embeddings"].append(read_raw_embedding(raw_emb)) | |||
| return data | |||
| def load_embedding(collection, qubo_id, solver_graph_id): | |||
| doc = collection.find_one( | |||
| { | |||
| "qubo": bson.ObjectId(qubo_id), | |||
| "solver_graph": bson.ObjectId(solver_graph_id) | |||
| } | |||
| ) | |||
| if doc == None: | |||
| return None | |||
| if doc["embeddings"] == None: | |||
| return None | |||
| if len(doc["embeddings"]) == 0: | |||
| return None | |||
| return read_raw_embedding(doc["embeddings"][0]) | |||
| def get_id_of_solver_graph(collection, nx_graph_data): | |||
| doc = collection.find_one({"data": nx_graph_data}) | |||
| if doc == None: | |||
| return None | |||
| return doc["_id"] | |||
| def load_WMIS_qubo_of_instance(collection, instance_id): | |||
| doc = load_WMIS_qubo_of_instance_raw(collection, instance_id) | |||
| if doc == None: | |||
| return None | |||
| return read_raw_qubo(doc["qubo"]), doc["_id"] | |||
| def get_WMIS_qubo_id_of_instance(collection, instance_id): | |||
| doc = load_WMIS_qubo_of_instance_raw(collection, instance_id) | |||
| if doc == None: | |||
| return None | |||
| return doc["_id"] | |||
| def load_WMIS_qubo_of_instance_raw(collection, instance_id): | |||
| return collection.find_one({"instance": bson.ObjectId(instance_id)}) | |||
| def read_raw_qubo(raw_qubo): | |||
| qubo = {} | |||
| for entry in raw_qubo: | |||
| energy = entry[1] | |||
| raw_coupler = entry[0] | |||
| node1 = tuple(raw_coupler[0]) | |||
| node2 = tuple(raw_coupler[1]) | |||
| qubo[(node1, node2)] = energy | |||
| return qubo | |||
| def read_raw_embedding(raw_embedding): | |||
| emb = {} | |||
| for entry in raw_embedding: | |||
| emb[tuple(entry[0])] = entry[1] | |||
| return emb | |||
+ 26
- 1
util/randomSAT.py
View File
+ 81
- 0
util/random_instance_pool.py
View File
| @ -0,0 +1,81 @@ | |||
| #!/usr/bin/env python3 | |||
| from . import randomSAT | |||
| class Random_instance_pool: | |||
| def __init__(self, parameter_range): | |||
| self.__parameter_range = parameter_range | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| params = self.__parameter_range.next() | |||
| return randomSAT.generateRandomKSAT(params.number_of_clauses, | |||
| params.number_of_variables, | |||
| params.variables_per_clause) | |||
| class Instance_parameters: | |||
| def __init__(self, | |||
| number_of_clauses, | |||
| number_of_variables, | |||
| variables_per_clause = 3): | |||
| self.number_of_clauses = number_of_clauses | |||
| self.number_of_variables = number_of_variables | |||
| self.variables_per_clause = variables_per_clause | |||
| def __str__(self): | |||
| return ("number of clauses: {}\n" | |||
| "number of variables: {}\n" | |||
| "variables per clause: {}").format(self.number_of_clauses, | |||
| self.number_of_variables, | |||
| self.variables_per_clause) | |||
| class Instance_parameter_variable_range: | |||
| def __init__(self, start_parameter, variable_range): | |||
| self.start_parameter = start_parameter | |||
| self.__variable_range = variable_range | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| self.start_parameter.number_of_variables = self.__variable_range.next() | |||
| return self.start_parameter | |||
| def next(self): | |||
| return self.__next__() | |||
| class Manual_range: | |||
| def __init__(self, start, stop, step = 1): | |||
| self.start = start | |||
| self.stop = stop | |||
| self.step = step | |||
| self.__current = start | |||
| def __iter__(self): | |||
| return self | |||
| def __next__(self): | |||
| if self.__current >= self.stop: | |||
| raise StopIteration | |||
| self.__current += self.step | |||
| return self.__current | |||
| def next(self): | |||
| return self.__next__() | |||